NGS Analysis Learning
Introduction
Basic
Concepts
NGS introduce
Shortening
Reference
Library Prepare
RNA-Seq
Fragmentation
File Type
Data Processing
RNA-Seq
Data Analysis
Biological Databases
NGS Tools
Enviroment
FastQC
trimmomatic
TopHat2
Bowtie2
Cufflinks
HISAT2
R language
R basic
shiny
Database
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NGS introduce
NGS introduce
NGS and Microarray
Microarray可偵測的訊號範圍受限於雜訊、探針飽和,NGS可透過調整reads number至研究者實驗所需深度,NGS的訊號偵測範圍幾乎是unlimited dynamic range。
PE and SE
Advantage of PE
More accurate
detect indel
higher SNV calls
Removal of PCR duplication
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