NGS Tools
Environment setting//預計併入Linux basic
- Linux Distribution
- Java Runtime Environment (JRE)
- Terminal Software
NGS Analysis Tools
- SRAtoolkit (Official Website)
- Bowtie2
- SAMtools
- cushaw2_index
- FastQC(need JVM)
- FASTX Toolkit (native code, include all FastQC function)(Official Website)
- sRNAbench (Office Website)
- tophat
- cufflink
- Trimmomatic